Index

A

AnimAcross (class in bardensr.plotting) AnimGif (class in bardensr.plotting)

apply_translations() (in module bardensr.registration) argmax_nd() (in module bardensr.misc)

B

background_subtraction() (in module bardensr.preprocessing) bardensr.benchmarks module bardensr.misc module bardensr.plotting module bardensr.preprocessing module

bardensr.preprocessing.preprocessing_tf module bardensr.rectangles module bardensr.registration module bardensr.spot_calling module

C

colorbleed_plot() (in module bardensr.preprocessing)

ColoredPointcloudMatching (class in bardensr.benchmarks)

D

df_to_locs_and_j() (in module bardensr.benchmarks)

distributed_translation_estimator() (in module bardensr.registration) dotproducts_at_translations() (in module bardensr.registration)

E

estimate_density_iterative() (in module bardensr.spot_calling)

estimate_density_singleshot() (in module bardensr.spot_calling)

F

fill_ignoreoob() (in module bardensr.rectangles)

find_peaks() (in module bardensr.spot_calling) find_translations_using_model() (in module bardensr.registration)

G

gaussian_filter_1d() (in module bardensr.preprocessing.preprocessing_tf)

L

locs_and_j_to_df() (in module bardensr.benchmarks)

lutup4() (in module bardensr.plotting)

M

match_colored_pointclouds() (in module bardensr.benchmarks) minmax() (in module bardensr.preprocessing) (in module bardensr.preprocessing.preprocessing_tf) module bardensr.benchmarks bardensr.misc bardensr.plotting bardensr.preprocessing bardensr.preprocessing.preprocessing_tf bardensr.rectangles bardensr.registration bardensr.spot_calling

P

pairwise_correlation_registration() (in module bardensr.registration)

pointcloud_in_box_test() (in module bardensr.rectangles)

S

scatter_ignoreoob() (in module bardensr.rectangles)

sliceit() (in module bardensr.rectangles) sliceit0() (in module bardensr.rectangles)